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Plant disease forms new variants at unprecedented speed and spreads globally

One of the world’s most widespread and problematic plant diseases, wheat yellow rust, is evolving faster and more unpredictably than previously thought. A new study from Aarhus University shows how rust fungi create new, aggressive variants in the field that can spread across continents within just a few years.

Yellow rust on wheat can develop new, aggressive variants directly in the field and spread globally within just a few years. The disease poses a growing challenge to plant breeding and food security. Photo: Jens Grønbech Hansen

Rust from a European wheat field can appear on the other side of the globe only a few years later. This is demonstrated by a new international study led by researchers from Aarhus University. They have mapped how yellow rust not only spreads globally but also evolves faster and more unpredictably than previously assumed.

“New variants emerging in Europe can have consequences for Australia and South America, and what happens in Asia can affect Europe just a few years later,” says Mogens Støvring Hovmøller, professor at the Department of Agroecology and head of the Global Rust Reference Center.

The world has become smaller for plant diseases

The study is based on more than 15 years of monitoring yellow rust in 41 countries across six continents, involving over 400 collaborators. The conclusion is clear: the world is far more interconnected than previously believed. Whereas it once took decades or even centuries for diseases to spread between continents, this now happens significantly faster.

“It took almost 200 years from wheat was first grown in Australia until yellow rust was recorded there for the first time. In the past decade, we have seen at least three cases of yellow rust spreading from other continents to Australia,” Mogens Støvring Hovmøller explains.

The spread occurs through wind, but increasingly also via human activity associated with trade and travel, where microscopic fungal spores can hitch a ride on shoes, clothing, and similar items.

New and surprising discovery: development directly in the field

In addition to increased global spread, the study documents a completely new mechanism for the formation of new yellow rust variants. Yellow rust can generate new variants through a direct exchange of nuclei between different individuals growing on the same plant.

“In practice, this means that half of the genetic material can be replaced in one go. That is something fundamentally different from the small mutations we usually observe,” Mogens Støvring Hovmøller says.

The phenomenon, known as hybridisation, has previously been observed in laboratory experiments, but it is now documented to occur under natural field conditions. The consequence is that entirely new and potentially more aggressive yellow rust variants can emerge and spread in a short time.

From local event to global epidemic

A concrete example from the study shows how two new hybrids emerged in Europe between 2012 and 2014 and, within just a few years, spread to several continents where they are now dominant. In both South America and Australia, these new yellow rust variants have led to severe epidemics.

“In South America, we saw some of the worst outbreaks ever, even though farmers applied fungicides multiple times,” says Mogens Støvring Hovmøller.

Challenges for plant breeding and food security

This new knowledge has direct implications for agriculture. When rust fungi can both spread rapidly around the globe and simultaneously generate new variants, it becomes more difficult to develop wheat varieties with durable disease resistance.

“It becomes more unpredictable what will happen. Some of the new variants can overcome the resistance we have bred into the varieties,” Mogens Støvring Hovmøller explains.

According to the researchers, yellow rust has the potential to significantly affect yields and crop reliability in areas hit by epidemics.

Monitoring is key to timely response

The study highlights the importance of international collaboration. Through a global network of researchers and joint monitoring, new rust variants can be detected early, allowing action before they spread more widely.

“When we discover something new in one place, we can test what it means for wheat varieties elsewhere in Europe and globally. In this way, together with our international colleagues, we can provide an early warning,” says Mogens Støvring Hovmøller.

This type of monitoring and collaboration is precisely what the Global Rust Reference Center works with.

A global challenge requires global solutions

The researchers’ main message is clear: plant diseases do not respect national borders. They move across continents and evolve at a pace that requires far closer international collaboration in research, surveillance, and plant breeding.

“This shows that we are deeply interdependent. It is no longer a local issue when new rust variants emerge somewhere in the world,” says Mogens Støvring Hovmøller.

Fact box: Global Rust Reference Center (GRRC)

GRRC is an international center at Aarhus University that monitors and analyses rust diseases in cereals, especially wheat.
Researchers at the center work with:
  • Global mapping of wheat rust
  • Analysis of new and existing rust variants in cereals and grasses, and their effects on species and varieties
  • Early warning of new, potentially dangerous variants
  • Collaboration with researchers, plant breeders, and authorities worldwide
The center is part of an extensive international network of researchers and institutions across continents. GRRC receives rust samples from around the world and operates a database and communication platform that analyses and visualises where different rust variants occur, which varieties they attack, and how they spread.
 

Why is this important?

Rust fungi can spread rapidly and cause major losses in agriculture. By detecting new types early, it becomes possible to:
  • adapt plant breeding
  • advise farmers and authorities
  • reduce the risk of epidemics

For more information 

For mere information 

Collaborators: Department of Agroecology at Aarhus University, University of Bonn, CIMMYT Nepal, Turkey-ICARDA Regional Cereal Rust Research Center, The University of Sydney, The Australian National University og Instituto Nacional de Investigación Agropecuaria (INIA).

Funding: This research was supported by multiple funding sources, including a series of grants by the Bill and Melinda Gates Foundation, the UK Foreign, Commonwealth & Development Office (INV-048345, DEWAS; INV-003439, AGG; ID 0PP1133199, DGGW; OPPGD1389: DRRW), the Strategic Danish Research Council (grant no.: 11-116241, RUSTFIGHT), the Danish Ministry of Food, Agriculture and Fisheries (grant no.: 34120902567), Novo Nordisk Foundation (grant no.: 0056457); a series of grant agreements from Jordbruksverket (Sweden), (grant nos.: 21-11857/09, 25-6922/10, 25-2363/12, 4.4.11-1615/14, 4.4.11-01001/18, 4.4.11-17402/2021), Research Council of Norway (Hveterust, grant no.: 301835), as well as long-term support by Aarhus University. Mareike Möller was supported by Horizon Europe Marie Skłodowska-Curie fellowship (R-evolution, grant no.: 10119509). The work of Marcel Meyer was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – grant no.: 529743941. Work at ANU was supported by DP230100941 from the Australian Research Council. Rita Tam was supported by a Grains Research and Development Corp. Graduate Research Scholarship. Rust sampling undertaken by Turkey-ICARDA Regional Cereal Rust Research Center (RCRRC) was additionally supported by TAGEM (General Directorate of Agricultural Research and Policies of Turkey), CRP Wheat (CIMMYT) and FAO-Turkey. The authors are grateful to Ellen Jørgensen, Janne Holm Hansen, Jakob Sørensen and Steen Meier, Aarhus University, for technical assistance during yellow rust genotyping and virulence phenotyping of 1000s of rust isolates at the Global Rust Reference Center during 15 yr, Sambasivam Periyannan, Andrew Milgate, Ashley Jones, Zhenyan Luo, Zhara Chew, Eric Pereira and Danish Baig for sample characterization and assistance in the genomic research concerning isolates of PstS0, PstS7 and PstS10 (ANU), and Ezgi Kurtulus, Handan Kavas and Ali Kadiroğlu for assisting in collection and preparing samples provided by the Turkey-ICARDA RCRRC. The deposition and access to a reference collection of Pst isolates from USA up to 2015 by Eugine Milus is highly appreciated, as well as the contributions of c. 420 people assisting in disease surveillance, sampling and submission of rust samples throughout the period 2009-2023, often under difficult and challenging conditions, without whom this work would not have been possible

Conflict of interest: None

Read more: The publication “Long-term surveillance reveals hybridization by nuclear reassortment and intercontinental spread as major evolutionary drivers in wheat yellow rust” is published in New Phytologist. It is written by Mogens Støvring HovmøllerTine ThachJulian Rodriguez-AlgabaJens Grønbech HansenMarcel MeyerDavid P. HodsonKumarse NazariRobert F. ParkRita TamMareike MöllerBenjamin SchwessingerJohn P. RathjenPaula SilvaVenancio RiellaAnnemarie Fejer Justesen

Contact

Professor Mogens Støvring Hovmøller, Deparment of Agroecology, Aarhus University. Tel.: 22283361 or mail: mogens.hovmoller@agro.au.dk 

Kommunikationsrådgiver Camilla Brodam Galacho, Deparment of Agroecology, Aarhus University. Tel. 93522136 or mail brodam@agro.au.dk